miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Populus trichocarpa



ABOUT THIS RECORD

ID: MNEST041367
species: Populus trichocarpa
miRNA family: MIR169
source: miRBase, original name: ptc-MIR169m (MI0002263)

Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TAGCCAAGGATGACTTGCCTG

miRNA*
GGCGGTCTCCTTGGCTAACT

mismatches: 0
bulges: 3

View larger
pre-miRNA
TCTTGTTTGGTAGCCAAGGATGACTTGCCTGCTCCCTTCAAGGAGGTTTCATGAAATGCAGACATGATCTCTCGAAACCCCTGTTGGGTTTCAGGCGGTC
TCCTTGGCTAACT
TGACAG


dot-bracket secondary structure
...((((.((((((((((((.((((.(((((..(((....(((.((((((..((.((.((....)))).))..)))))))))...)))...)))))))))
))))))))).)))
.)))).



SIMILARITIES
miRBase ptc-MIR169i: 2e-24

PMRD ptc-miR169m: 3e-63

microPC miR169: 0.00009
UniProt no hits

RFAM MIR169_5: 5e-62

Identical with: ptc-miR169m from PMRD (MNEST051670)

MORE

miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record

references

[1] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"
[2] Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm, Science. 313:1596-1604(2006)., "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)"




Liczniki na strone;